Johan Hake, PhD

Department of Bioengineering University of California San Diego 9500 Gilman Drive La Jolla, CA 92093-0412 Email: <jhake AT SPAMFREE ucsd DOT edu> Email: <johan.hake AT SPAMFREE gmail DOT com>

Soon text about my history, scientific interests and achievements will appear here

Graphics

Selected graphics produced by me using inkscape

Software

I am the main maintainer of several different software packages:

• The Python interface of DOLFIN a Finite element library within the umbrella of FEniCS (C++/Python).

• GillStep a tool to define and solve discrete and stochastic Markov models using a modified Gillespie solver (C++/Python)

• SubCell a simulation tool for arbitrary reaction diffusion equation based on FEniCS (Python)

• GAMer a surface mesh improvement tool within the software library of FEtk, which can be integrated into Blender for a nice Gui user experience, see here. It generates volumetric meshes using tetgen. download (C/Python)

Talks

Mesh improvements using Blender and GAMer
Mesh improvement tutorial using Blender and GAMer
Talk on SubCell a software solving general reaction-diffusion equations using FEniCS
Tutorial on SubCell a software solving general reaction-diffusion equations using FEniCS
Mesh improvements using GAMer
Introduction to Finite element method using FEniCS
SI2010 session instructions
NBCR techseries 10/28/10

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